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Computación

Datos personales


Nombre:	Brizuela Rodríguez , Carlos Alberto
Categoría:	INVESTIGADOR TITULAR
SNI:	INVESTIGADOR I
Departamento:	Ciencias de la Computación
División:	Física Aplicada
Correo:	cbrizuel@cicese.mx
Extensión:	00000

Proyectos

Algoritmos para aplicaciones en biocomputación, teoría de grafos y optimización

Algoritmos para aplicaciones en biocomputación, teoría de grafos y optimización

Laboratorios

Biocomputación

Publicaciones

2023

Guerrero Vázquez, K., Del Río, G., & Brizuela Rodríguez, C. A. (2023). Cell-penetrating peptides predictors: A comparative analysis of methods and datasets. Molecular Informatics, 42(11), e202300104. doi: 10.1002/minf.202300104. (ID: 29370)

Aguilera Mendoza, L., Ayala Ruano, S., Martinez Rios, F., Chávez González, E. L., García Jacas, C. R., Brizuela Rodríguez, C. A., & Marrero Ponce, Y. (2023). StarPep Toolbox: an open-source software to assist chemical space analysis of bioactive peptides and their functions using complex networks. BIOINFORMATICS. doi: 10.1093/bioinformatics/btad506. (ID: 28884)

García González, L. A., Marrero Ponce, Y., Brizuela Rodríguez, C. A., & García Jacas, C. R. (2023). Overproduce and select, or determine optimal molecular descriptor subset via configuration space optimization? Application to the prediction of ecotoxicological endpoints. Molecular Informatics, 42(6), e202200227. doi: 10.1002/minf.202200227. (ID: 29442)

Meléndrez Carballo, G., Guerrero Vázquez, K., García González, L. A., Del Río, G., & Brizuela Rodríguez, C. A. (2023). Embedded-AMP: A Multi-Thread Computational Method for the Systematic Identification of Antimicrobial Peptides Embedded in Proteome Sequences. Antibiotics, 12(1), 139. doi: 10.3390/antibiotics12010139. (ID: 29369)

2022

García Jacas, C. R., García González, L. A., Martinez Rios, F., Tapia Contreras, I. P., & Brizuela Rodríguez, C. A. (2022). Handcrafted versus non-handcrafted (self-supervised) features for the classification of antimicrobial peptides: complementary or redundant?. BRIEFINGS IN BIOINFORMATICS. doi: 10.1093/bib/bbac428. (ID: 28018)

Del Río, G., Trejo Perez, M., & Brizuela Rodríguez, C. A. (2022). Antimicrobial peptides with cell-penetrating activity as prophylactic and treatment drugs. BIOSCIENCE REPORTS, 42(9), BSR20221789. doi: 10.1042/BSR20221789. (ID: 28365)

García Jacas, C. R., Pinacho Castellanos, S. A., García González, L. A., & Brizuela Rodríguez, C. A. (2022). Do deep learning models make a difference in the identification of antimicrobial peptides?. BRIEFINGS IN BIOINFORMATICS, 16. doi: 10.1093/bib/bbac094. (ID: 27757)

Valenzuela Alcaraz, V. M., Cosío León, M. Á., Romero Ocaño, A. D., & Brizuela Rodríguez, C. A. (2022). A cooperative coevolutionary algorithm approach to the no-wait job shop scheduling problem. Expert Systems with Applications, (194), 116498. doi: 10.1016/j.eswa.2022.116498. (ID: 28369)

Romero Ocaño, A. D., Cosío León, M. Á., Valenzuela Alcaraz, V. M., & Brizuela Rodríguez, C. A. (2022). The impact of gradually replacing fossil fuel-powered vehicles with electric ones: A bi-objective optimisation approach. Expert Systems with Applications, 194, 116546. doi: 10.1016/j.eswa.2022.116546. (ID: 28368)

von Lucken, C., Brizuela Rodríguez, C. A., & Barán Cegla, B. (2022). Clustering-based multipopulation approaches in MOEA/D for many-objective problems. COMPUTATIONAL OPTIMIZATION AND APPLICATIONS, 81, 789¿828. doi: 10.1007/s10589-022-00348-0. (ID: 28370)

2021

Ricci López, J., Aguila, S., Gilson, M. K., & Brizuela Rodríguez, C. A. (2021). Improving structure-based virtual screening with ensemble docking and machine learning. Journal of Chemical Information and Modeling. doi: 10.1021/acs.jcim.1c00511. (ID: 27659)

Juárez Jiménez, J. A., Santos, C., & Brizuela Rodríguez, C. A. (2021). A Comprehensive Review and a Taxonomy Proposal of Team Formation Problems. ACM Computing Surveys, 54(7), 1-33. doi: 10.1145/3465399. (ID: 26925)

Gonzalez, M. R., Martinez Rosas, M. E., Cosío León, M. Á., Cervantes De Ávila, H., & Brizuela Rodríguez, C. A. (2021). Multiple circle detection in images: a simple evolutionary algorithm approach and a new benchmark of images. PATTERN ANALYSIS AND APPLICATIONS, 24, 1583-1603. doi: 10.1007/s10044-021-01007-6. (ID: 27661)

Pinacho Castellanos, S. A., García Jacas, C. R., Gilson, M. K., & Brizuela Rodríguez, C. A. (2021). Alignment-Free Antimicrobial Peptide Predictors: Improving Performance by a Thorough Analysis of the Largest Available Data Set. Journal of Chemical Information and Modeling, 61(6), 3141-3157. doi: 10.1021/acs.jcim.1c00251. (ID: 26953)

2020

Aguilera Mendoza, L., Marrero Ponce, Y., García Jacas, C. R., Chávez González, E. L., Beltrán Verdugo, J. A., Guillén Ramírez, H. A., & Brizuela Rodríguez, C. A. (2020). Automatic construction of molecular similarity networks for visual graph mining in chemical space of bioactive peptides: an unsupervised learning approach. Scientific Reports, 10, 18074. doi: 10.1038/s41598-020-75029-1. (ID: 26306)

Nava Lara, R., Beltrán Verdugo, J. A., Brizuela Rodríguez, C. A., & Del Río, G. (2020). Relevant Features of Polypharmacologic Human-Target Antimicrobials Discovered by Machine-Learning Techniques. Pharmaceuticals, 13(9), 204. doi: 10.3390/ph13090204. (ID: 26347)

Beltrán Verdugo, J. A., Del Río, G., & Brizuela Rodríguez, C. A. (2020). An automatic representation of peptides for effective antimicrobial activity classification. Computational and Structural Biotechnology Journal, 18, 455-463. doi: 10.1016/j.csbj.2020.02.002. (ID: 26350)

2019

Brizuela Rodríguez, C. A., & Juárez Jiménez, J. A. (2019). Optimización Evolutiva Multi-objetivo. In Carlos A. Coello Coello (Eds.), Computación Evolutiva (pp. 177-217). Academia Mexicana de Computación. (ID: 26546)

Aguilera Mendoza, L., Beltrán Verdugo, J. A., Guillén Ramírez, H. A., Marrero Ponce, Y., Tellez Ibarra, R., & Brizuela Rodríguez, C. A. (2019). Graph-based data integration from bioactive peptide databases of pharmaceutical interest: toward an organized collection enabling visual network analysis. BIOINFORMATICS, 35(55), 4739-4747. doi: 10.1093/bioinformatics/btz260. (ID: 25449)

Contreras Torres, E., Marrero Ponce, Y., Teran, J., García Jacas, C. R., Brizuela Rodríguez, C. A., & Sanchez Rodriguez, J. C. (2019). MuLiMs-MCoMPAs: A Novel Multiplatform Framework to Compute Tensor Algebra-Based Three-Dimensional Protein Descriptors. Journal of Chemical Information and Modeling. doi: 10.1021/acs.jcim.9b00629. (ID: 25457)

García Jacas, C. R., Marrero Ponce, Y., Brizuela Rodríguez, C. A., Suárez Lezcano, J., & Martinez Rios, F. (2019). Smoothed Spherical Truncation based on Fuzzy Membership Functions: Application to the Molecular Encoding. JOURNAL OF COMPUTATIONAL CHEMISTRY, 41(3), 203-217. doi: 10.1002/jcc.26089. (ID: 25402)

Nava Lara, R., Aguilera Mendoza, L., Brizuela Rodríguez, C. A., Peña, A., & Del Río, G. (2019). Heterologous Machine Learning for the Identification of Antimicrobial Activity in Human-Targeted Drugs. MOLECULES, 24(1258). doi: 10.3390/molecules24071258. (ID: 25452)

Ricci López, J., Vidal Limon, A., Matias Zunñiga, V., Alderete Jimenez, J., Brizuela Rodríguez, C. A., & Aguila, S. (2019). Molecular modeling simulation studies reveal new potential inhibitors against HPV E6 protein. PLoS ONE. doi: 10.1371/journal.pone.0213028. (ID: 25450)

Romero Ocaño, A. D., Brizuela Rodríguez, C. A., Valenzuela Alcaraz, V. M., & Cosío León, M. Á. (2019). Comparación de los algoritmos NSGA-II y MOEA/D en la solución del problema de rutas de vehículos eléctricos con ventanas de tiempo y estaciones de recarga. In M. López Acosta, M. Cedillo Campos, J. Velarde Cantú, A. Bueno Solano, E. Lagarda Leyva (Eds.), Gestión en la Cadena de Suministro: Aplicaciones en Latinoamérica (pp. 17-34). Pearson. (ID: 26544)

2018

Beltrán Verdugo, J. A., Aguilera Mendoza, L., & Brizuela Rodríguez, C. A. (2018). Optimal selection of molecular descriptors for antimicrobial peptides classification: An evolutionary feature weighting approach. BMC GENOMICS, 19(7), 672. doi: 10.1186/s12864-018-5030-1. (ID: 23884)

von Lucken, C., Brizuela Rodríguez, C. A., & Barán Cegla, B. (2018). An overview on evolutionary algorithms for many-objective optimization problems. Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery. doi: 10.1002/widm.1267. (ID: 23748)

Zatarain Aceves, H., Fernández Zepeda, J. A., & Brizuela Rodríguez, C. A. (2018). The Maximum Uniform Message Distribution Problem. IEEE Access. doi: 10.1109/ACCESS.2018.2837624. (ID: 23687)

Juárez Jiménez, J. A., Brizuela Rodríguez, C. A., & Martínez Pérez, I. M. (2018). An Evolutionary Multi-objective Optimization Algorithm for the Routing of Droplets in Digital Microfluidic Biochips. Information Sciences, 429, 130-146. (ID: 23019)

Colbes Sanabria, J. D., Brizuela Rodríguez, C. A., & Aguila, S. (2018). Scoring of Side-Chain Packings: An Analysis of Weight Factors and Molecular Dynamics Structures. Journal of Chemical Information and Modeling, 58(2), 443-452. doi: 10.1021/acs.jcim.7b00679. (ID: 23688)

2017

Corral Corral, R., Beltrán Verdugo, J. A., Brizuela Rodríguez, C. A., & Del Río, G. (2017). Systematic identification of machine-learning models aimed to classify critical residues for protein function from protein structure. MOLECULES, 22(10), 1673. doi: 10.3390/molecules22101673. (ID: 23018)

Garza Moreno, J. C., Panduro Mendoza, M. A., Reyna Maldonado, A., Covarrubias Rosales, D. H., & Brizuela Rodríguez, C. A. (2017). Synthesis of a Scannable Pattern for 3D Cubic Antenna Arrays. IETE TECHNICAL REVIEW. doi: 10.1080/02564602.2017.1347073. (ID: 22527)

2016

Colbes Sanabria, J. D., Corona de la Fuente, R. I., Lezcano Ríos, C., Rodríguez Uribe, D. O., & Brizuela Rodríguez, C. A. (2016). Protein side-chain packing problem: is there still room for improvement?. BRIEFINGS IN BIOINFORMATICS. doi: 10.1093/bib/bbw079. (ID: 20845)

von Lucken, C., Brizuela Rodríguez, C. A., & Barán Cegla, B. (2016). Experimental comparison of many-objective evolutionary preference-based methods in parallel framework. Journal of Computational Interdisciplanary Sciences, 7(1), 13-20. doi: 10.6062/jcis.2016.07.01.0103. (ID: 22381)

2015

Zatarain Aceves, H., Fernández Zepeda, J. A., Brizuela Rodríguez, C. A., & Fajardo Delgado, D. (2015). A cascade evolutionary algorithm for the bodyguard allocation problem. Applied Soft Computing, 37, 643-651. doi: 10.1016/j.asoc.2015.08.056. (ID: 19498)

Vargas Gastélum, L. B., Romero Olivares, A. L., Escalante Hernández, A. E., Rocha Olivares, A., Brizuela Rodríguez, C. A., & Riquelme Pérez, M. (2015). Impact of seasonal changes on fungal diversity of a semi-arid ecosystem revealed by 454 pyrosequencing. FEMS Microbiology Ecology, 91(5), 13. doi: 10.1093/femsec/fiv044. (ID: 19079)

2014

Pinto Roa, D., Brizuela Rodríguez, C. A., & Barán Cegla, B. (2014). Multi-objective routing and wavelength converter allocation under uncertain traffic. Optical Switching and Networking. doi: 10.1016/j.osn.2014.10.001. (ID: 17807)

García Nájera, A., Brizuela Rodríguez, C. A., & Martínez Pérez, I. M. (2014). An efficient genetic algorithm for setup time minimization in PCB assembly. INTERNATIONAL JOURNAL OF ADVANCED MANUFACTURING TECHNOLOGY. doi: 10.1007/s00170-014-6510-3. (ID: 17805)

López Monzalvo, F., & Brizuela Rodríguez, C. A. (2014). An experimental analysis of the p-Median problem under uncertainty: an evolutionary algorithm approach. European Journal of Industrial Engineering, 8(4), 554-578. doi: 10.1504/EJIE.2014.064759. (ID: 16526)

Flores Granados, D. I., Sotelo Mundo, R., & Brizuela Rodríguez, C. A. (2014). A simple extension to the CMASA method for the prediction of catalytic residues in the presence of single point mutations. PLoS ONE, 9(9), e108513. doi: 10.1371/journal.pone.0108513. (ID: 17227)

von Lucken, C., Barán Cegla, B., & Brizuela Rodríguez, C. A. (2014). A survey on multi-objective evolutionary algorithms for many-objective problems. COMPUTATIONAL OPTIMIZATION AND APPLICATIONS, 58(3), 707-756. doi: 10.1007/s10589-014-9644-1. (ID: 17806)

2013

Cervantes Salido, V. M., Jaime Solis, O., Brizuela Rodríguez, C. A., & Martínez Pérez, I. M. (2013). Improving the design of sequences for DNA computing: a multiobjective evolutionary approach. Applied Soft Computing, 13(12), 4594-4607. doi: 10.1016/j.asoc.2013.06.010. (ID: 15863)

Panduro Mendoza, M. A., Brizuela Rodríguez, C. A., Garza Moreno, J. C., Hinojosa Álvarez, S. J., & Reyna Maldonado, A. (2013). A comparison of NSGA-II, DEMO, and EM-MOPSO for the multi-objective design of concentric, rings antenna arrays. Journal of Electromagnetic Waves and Applications, 27(9), 1100-1113. doi: 10.1080/09205071.2013.801040. (ID: 16341)

2011

Gutiérrez López, E., & Brizuela Rodríguez, C. A. (2011). An enhanced MOGWW for the bi-objetctive quadratic assignment problem. International Journal of Computational Intelligence Systems, 4(4), 530-549. doi: 10.2991/ijcis.2011.4.4.12. (ID: 12532)

Pinto Roa, D., Barán Cegla, B., & Brizuela Rodríguez, C. A. (2011). Routing and wavelength converter allocation in WDM networks: a multi-objective evolutionary optimization approach. Photonic Network Communications. doi: 10.1007/s11107-011-0304-4. (ID: 12466)

2009

Palacios Alonso, M. A., Brizuela Rodríguez, C. A., & Sucar Succar, L. E. (2009). Evolutionary learning of dynamic naive bayesian classifiers. Journal of Automated Reasoning. doi: 10.1007/s10817-009-9130-0. (ID: 13596)

Panduro Mendoza, M. A., Brizuela Rodríguez, C. A., Balderas, L. I., & Acosta, D. A. (2009). A comparison of genetic algorithms, particle swarm optimization and the differential evolution method for the design of scannable circular antenna arrays. Progress In Electromagnetics Research B, 13, 171-186. doi: 10.2528/PIERB09011308. (ID: 13595) ^(E)

Chernykh, A., Trystram, D., Brizuela Rodríguez, C. A., & Scherson, I. (2009). Idle regulation in non-clairvoyant scheduling of parallel jobs. Discrete Applied Mathematics, 157(2), 369-376. doi: 10.1016/j.dam.2008.03.005. (ID: 13183)

2008

Panduro Mendoza, M. A., & Brizuela Rodríguez, C. A. (2008). Evolutionary multi-objective design of non-uniform circular phased arrays. COMPEL: The international journal for computation and mathematics in electrical and electronic engineering, 27(2), 551-566. doi: 10.1108/03321640810847823. (ID: 11588)

Panduro Mendoza, M. A., Brizuela Rodríguez, C. A., & Covarrubias Rosales, D. H. (2008). Design of electronically steerable linear arrays with evolutionary algorithms. Applied Soft Computing, 8(1), 46-54. doi: 10.1016//j.asoc.2006.10.011. (ID: 9229)

2007

Brizuela Rodríguez, C. A., Rodríguez Zambrano, M., & Luna Taylor, J. E. (2007). Evolutionary computation techniques for two computational biology problems. In G. Romero, A. Méndez, M. Panduro and R. Domínguez. (Eds.), New Trends in Electronics Technology (pp. 111-118). Innovación Editorial Lagares. (ID: 11615)

Brizuela Rodríguez, C. A., González Gurrola, L. C., Chernykh, A., & Trystram, D. (2007). Sequencing by hybridization: an enhanced crossover operator for a hybrid genetic algorithm. Journal of Heuristics, 13(3), 209-225. doi: 10.1007/S10732-007-9014-6. (ID: 11890)

Rocha Alicano, C. R., Covarrubias Rosales, D. H., Brizuela Rodríguez, C. A., & Panduro Mendoza, M. A. (2007). Differential evolution algorithm applied to sidelobe level reduction on a planar array. AEU - International Journal of Electronics and Communications, 61(5), 286-290. doi: 10.1016/j.aeue.2006.05.008. (ID: 7877)

2006

Panduro Mendoza, M. A., Brizuela Rodríguez, C. A., Covarrubias Rosales, D. H., & López Miranda, C. A. (2006). A trade-off curve computation for linear antenna arrays using an evolutionary multi-objective approach. Soft Computing, 10, 125-131. (ID: 8259)

2005

Panduro Mendoza, M. A., Covarrubias Rosales, D. H., Brizuela Rodríguez, C. A., & Marante Rizo, F. R. (2005). A multi-objective approach in the linear antenna array design. AEU - International Journal of Electronics and Communications, 59(4), 205-212. (ID: 5214)

2004

Méndez Pérez, A. L., Covarrubias Rosales, D. H., & Brizuela Rodríguez, C. A. (2004). Fair scheduling with dynamic resource allocation in CDMA/GPS system for IP-multimedia wireless networks. Journal of Circuits, Systems and Computers, 13(2), 253-269. (ID: 6192)

2001

Brizuela Rodríguez, C. A., & Sannomiya, N. (2001). Robustness and diversity in genetic algorithms for a complex combinatorial optimization problem. International Journal of Systems Science, 32(9), 1161-1168. (ID: 9242) ^(E)

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